UTHSC Department of Molecular Sciences Accomplishments

Department Of Molecular Sciences Publications 2004-2008

2004 | 2005 | 2006 | 2007 | 2008

2007 Publications

  1. Tate, J.J. and Cooper, T.G. (2007) Stress-responsive Gln3 localization in Saccharomyces cerevisiae is separable from and can overwhelm nitrogen source regulation. Journal of Biological Chemistry, 282, 18467.
  2. Tani, H., Komoda, Y., Matsuo, E., Suzuki, K., Hamamoto, I., Yamashita, T., Moriishi, K., Fujiyama, K., Kanto, T., Hayashi, N., Owsianka, A., Patel, A.H., Whitt, M.A. and Matsuura, Y. (2007) Replication-competent recombinant vesicular stomatitis virus encoding hepatitis C virus envelope proteins. Journal of Virology, 81, 8601.
  3. Bao, L., Zhou, M., Wu, L., Lu, L., Goldowitz, D., Williams, R.W. and Cui, Y. (2007) PolymiRTS Database: Linking polymorphisms in microRNA target sites with complex traits. Nucleic Acids Research, 35.
  4. Dorsey, F.C., Muthusamy, T., Whitt, M.A. and Cox, J.V. (2007) A novel role for a YXX? motif in directing the caveolin-dependent sorting of membrane-spanning proteins. Journal of Cell Science, 120, 2544.
  5. Tichansky, D.S., Madan, A.K., Ternovits, C.A., Fain, J.N. and Kitabchi, A.E. (2007) Laparoscopic bariatric patients' will to help: the foundation of research. Surgery for Obesity and Related Diseases, 3, 180.
  6. Bao, L., Peirce, J.L., Zhou, M., Li, H., Goldowitz, D., Williams, R.W., Lu, L. and Cui, Y. (2007) An integrative genomics strategy for systematic characterization of genetic loci modulating phenotypes. Human Molecular Genetics, 16, 1381.
  7. Sacks, H.S. and Fain, J.N. (2007) Human epicardial adipose tissue: A review. American Heart Journal, 153, 907.
  8. Cummings, E.D., Brown, J.M., Sarva, S.T., Waldo, R.H. and Hilliard, G.M. (2007) High-throughput proteomics processing of proteins in polyacrylamide in a multiwell format. Journal of Proteome Research, 6, 1603.
  9. Perez, M., Clemente, R., Robison, C.S., Jeetendra, E., Jayakar, H.R., Whitt, M.A. and De La Torre, J.C. (2007) Generation and characterization of a recombinant vesicular stomatitis virus expressing the glycoprotein of Borna disease virus. Journal of Virology, 81, 5527.
  10. Rogers, P.D., Liu, T.T., Barker, K.S., Hilliard, G.M., English, B.K., Thornton, J., Swiatlo, E. and McDaniel, L.S. (2007) Gene expression profiling of the response of Streptococcus pneumoniae to penicillin. Journal of Antimicrobial Chemotherapy, 59, 616.
  11. Neeli, I., Richardson, M.M., Khan, S.N., Nicolo, D., Monestier, M. and Radic, M.Z. (2007) Divergent members of a single autoreactive B cell clone retain specificity for apoptotic blebs. Molecular Immunology, 44, 1924.
  12. Senogles, S.E. (2007) D2 dopamine receptor-mediated antiproliferation in a small cell lung cancer cell line, NCI-H69. Anti-Cancer Drugs, 18, 801.
  13. Shanmuganatham, K.K., Ravichandran, M., Howe, M.M. and Park, H.W. (2007) Crystallization and preliminary X-ray analysis of phage Mu activator protein C in a complex with promoter DNA. Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 63, 620.
  14. Cao, F., Castrillo, A., Tontonoz, P., Re, F. and Byrne, G.I. (2007) Chlamydia pneumoniae-induced macrophage foam cell formation is mediated by toll-like receptor 2. Infection and Immunity, 75, 753.
  15. Madan, A.K., Whitfield, J.D., Fain, J.N., Beech, B.M., Ternovits, C.A., Menachery, S. and Tichansky, D.S. (2007) Are African-Americans as successful as caucasians after laparoscopic gastric bypass? Obesity Surgery, 17, 460.
  16. Li, H., Nookala, S. and Re, F. (2007) Aluminum hydroxide adjuvants activate caspase-1 and induce IL-1? and IL-18 release. Journal of Immunology, 178, 5271.

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2006 Publications

  1. Shen, L., Feng, X., Yuan, Y., Luo, X., Hatch, T.P., Hughes, K.T., Liu, J.S. and Zhang, Y.X. (2006) Selective promoter recognition by chlamydial?28 holoenzyme. Journal of Bacteriology, 188, 7364.
  2. Tate, J.J., Feller, A., Dubois, E. and Cooper, T.G. (2006) Saccharomyces cerevisiae Sit4 phosphatase is active irrespective of the nitrogen source provided, and Gln3 phosphorylation levels become nitrogen source-responsive in a sit4-deleted strain. Journal of Biological Chemistry, 281, 37980.
  3. Fain, J.N. (2006) Release of Interleukins and Other Inflammatory Cytokines by Human Adipose Tissue Is Enhanced in Obesity and Primarily due to the Nonfat Cells. In Litwack, G., (ed.), Vitamins and Hormones. Vol. 74, p. 443.
  4. Ye, Z., Cheng, K., Guntaka, R.V. and Mahato, R.I. (2006) Receptor-mediated hepatic uptake of M6P-BSA-conjugated triplex-forming oligonucleotides in rats. Bioconjugate Chemistry, 17, 823.
  5. Rogers, P.D., Vermitsky, J.P., Edlind, T.D. and Hilliard, G.M. (2006) Proteomic analysis of experimentally induced azole resistance in Candida glabrata. Journal of Antimicrobial Chemotherapy, 58, 434.
  6. He, H., Cai, L., Skogerbø, G., Deng, W., Liu, T., Zhu, X., Wang, Y., Jia, D., Zhang, Z., Tao, Y., Zeng, H., Aftab, M.N., Cui, Y., Liu, G. and Chen R. (2006) Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray. Nucleic Acids Research, 34, 2976.
  7. Nelson, D.R. (2006) Plant cytochrome P450s from moss to poplar. Phytochemistry Reviews, 5, 193.
  8. Deng, W., Zhu, X., Skogerbø, G., Zhao, Y., Fu, Z., Wang, Y., He, H., Cai, L., Sun, H., Liu, C., Li, B., Bai, B., Wang, J., Jia, D., Sun, S., He, H., Cui, Y., Wang, Y., Bu, D. and Chen R. (2006) Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression. Genome Research, 16, 20.
  9. Fain, J.N., Tichansky, D.S. and Madan, A.K. (2006) Most of the interleukin 1 receptor antagonist, cathepsin S, macrophage migration inhibitory factor, nerve growth factor, and interleukin 18 release by explants of human adipose tissue is by the non-fat cells, not by the adipocytes. Metabolism: Clinical and Experimental, 55, 1113.
  10. O'Farrell, T.J., Guo, R., Hasegawa, H. and Pourmotabbed, T. (2006) Matrix metalloproteinase-1 takes advantage of the induced fit mechanism to cleave the triple-helical type I collagen molecule. Biochemistry, 45, 15411.
  11. Kendall, R.T. and Senogles, S.E. (2006) Investigation of the alternatively spliced insert region of the D 2L dopamine receptor by epitope substitution. Neuroscience Letters, 393, 155.
  12. Li, H., Chen, H., Bao, L., Manly, K.F., Chesler, E.J., Lu, L., Wang, J., Zhou, M., Williams, R.W. and Cui, Y. (2006) Integrative genetic analysis of transcription modules: Towards filling the gap between genetic loci and inherited traits. Human Molecular Genetics, 15, 481.
  13. Li, H., Nookala, S., Bina, X.R., Bina, J.E. and Re, F. (2006) Innate immune response to Francisella tularensis is mediated by TLR2 and caspase-1 activation. Journal of Leukocyte Biology, 80, 766.
  14. Klas, S.D., Lavine, C.L., Whitt, M.A. and Miller, M.A. (2006) IL-12-assisted immunization against Listeria monocytogenes using replication-restricted VSV-based vectors. Vaccine, 24, 1451.
  15. Wang, E., Albritton, L. and Ross, S.R. (2006) Identification of the segments of the mouse transferrin receptor 1 required for mouse mammary tumor virus infection. Journal of Biological Chemistry, 281, 10243.
  16. Khaja, M.N., Madhavi, C., Thippavazzula, R., Nafeesa, F., Habib, A.M., Habibullah, C.M. and Guntaka, R.V. (2006) High prevalence of hepatitis C virus infection and genotype distribution among general population, blood donors and risk groups. Infection, Genetics and Evolution, 6, 198.
  17. Radic, M.Z., Shah, K., Zhang, W., Lu, Q., Lemke, G. and Hilliard, G.M. (2006) Heterogeneous nuclear ribonucleoprotein P2 is an autoantibody target in mice deficient for Mer, Axl, and Tyro3 receptor tyrosine kinases. Journal of Immunology, 176, 68.
  18. Ouellette, S.P., Hatch, T.P., AbdelRahman, Y.M., Rose, L.A., Belland, R.J. and Byrne, G.I. (2006) Global transcriptional upregulation in the absence of increased translation in Chlamydia during IFN?-mediated host cell tryptophan starvation. Molecular Microbiology, 62, 1387.
  19. Bao, L. and Cui, Y. (2006) Functional impacts of non-synonymous single nucleotide polymorphisms: Selective constraint and structural environments. FEBS Letters, 580, 1231.
  20. Cheng, K., Ye, Z., Guntaka, R.V. and Mahato, R.I. (2006) Enhanced hepatic uptake and bioactivity of type?1(I) collagen gene promoter-specific triplex-forming oligonucleotides after conjugation with cholesterol. Journal of Pharmacology and Experimental Therapeutics, 317, 797.
  21. Kulkarni, A., Buford, T.D., Rai, R. and Cooper, T.G. (2006) Differing responses of Gat1 and Gln3 phosphorylation and localization to rapamycin and methionine sulfoximine treatment in Saccharomyces cerevisiae. FEMS Yeast Research, 6, 218.
  22. Miyairi, I., Mahdi, O.S., Ouellette, S.P., Belland, R.J. and Byrne, G.I. (2006) Different growth rates of Chlamydia trachomatis biovars reflect pathotype. Journal of Infectious Diseases, 194, 350.
  23. Bosma, G.C., Oshinsky, J., Kiefer, K., Nakajima, P.B., Charan, D., Congelton, C., Radic, M. and Bosma, M.J. (2006) Development of functional B cells in a line of SCID mice with transgenes coding for anti-double-stranded DNA antibody. Journal of Immunology, 176, 889.
  24. Nelson, D.R. (2006) Cytochrome P450 nomenclature, 2004. Methods in molecular biology (Clifton, N.J.), 320, 1.
  25. Madan, A.K., Tichansky, D.S., Coday, M. and Fain, J.N. (2006) Comparison of IL-8, IL-6 and PGE2 formation by visceral (omental) adipose tissue of obese caucasian compared to African-American women. Obesity Surgery, 16, 1342.
  26. Bao, L., Wei, L., Peirce, J.L., Homayouni, R., Li, H., Zhou, M., Chen, H., Lu, L., Williams, R.W., Pfeffer, L.M., Goldowitz, D. and Cui, Y. (2006) Combining gene expression QTL mapping and phenotypic spectrum analysis to uncover gene regulatory relationships. Mammalian Genome, 17, 575.
  27. Miyairi, I. and Byrne, G.I. (2006) Chlamydia and programmed cell death. Current Opinion in Microbiology, 9, 102.
  28. Bina, J.E., Provenzano, D., Wang, C., Bina, X.R. and Mekalanos, J.J. (2006) Characterization of the Vibrio cholerae vexAB and vexCD efflux systems. Archives of Microbiology, 186, 171.
  29. Bina, X.R., Wang, C., Miller, M.A. and Bina, J.E. (2006) The Bla2?-lactamase from the live-vaccine strain of Francisella tularensis encodes a functional protein that is only active against penicillin-class?-lactam antibiotics. Archives of Microbiology, 186, 219.
  30. Zhou, Y.W., Thomason, D.B., Gullberg, D. and Jarrett, H.W. (2006) Binding of laminin?1-chain LG4-5 domain to?-dystroglycan causes tyrosine phosphorylation of syntrophin to initiate Rac1 signaling. Biochemistry, 45, 2042.
  31. Tate, J.J., Rai, R. and Cooper, T.G. (2006) Ammonia-specific regulation of Gln3 localization in Saccharomyces cerevisiae by protein kinase Npr1. Journal of Biological Chemistry, 281, 28460.

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2005 Publications

  1. Nelson, D.R. (2005) 'A variant of uncertain significance' and the proliferation of human disease gene databases. Human Genomics, 2, 70.
  2. Duntsch, C., Zhou, Q., Weimar, J.D., Frankel, B., Robertson, J.H. and Pourmotabbed, T. (2005) Up-regulation of neuropoiesis generating glial progenitors that infiltrate rat intracranial glioma. Journal of Neuro-Oncology, 71, 245.
  3. Fain, J.N., Tichansky, D.S. and Madan, A.K. (2005) Transforming Growth Factor?1 release by human adipose tissue is enhanced in obesity. Metabolism: Clinical and Experimental, 54, 1546.
  4. Silva, R.A.G.D., Hilliard, G.M., Fang, J., Macha, S. and Davidson, W.S. (2005) A three-dimensional molecular model of lipid-free apolipoprotein A-I determined by cross-linking/mass spectrometry and sequence threading. Biochemistry, 44, 2759.
  5. Ye, Z., Cheng, K., Guntaka, R.V. and Mahato, R.I. (2005) Targeted delivery of a triplex-forming oligonucleotide to hepatic stellate cells. Biochemistry, 44, 4466.
  6. Wilkins, C., Dishongh, R., Moore, S.C., Whitt, M.A., Chow, M. and Machaca, K. (2005) RNA interference is an antiviral defence mechanism in Caenorhabditis elegans. Nature, 436, 1044.
  7. Fain, J.N. and Madan, A.K. (2005) Regulation of monocyte chemoattractant protein 1 (MCP-1) release by explants of human visceral adipose tissue. International Journal of Obesity, 29, 1299.
  8. Bao, L. and Cui, Y. (2005) Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information. Bioinformatics, 21, 2185.
  9. Moxley, R.A. and Jarrett, H.W. (2005) Oligonucleotide trapping method for transcription factor purification systematic optimization using electrophoretic mobility shift assay. Journal of Chromatography A, 1070, 23.
  10. Bao, L., Zhou, M. and Cui, Y. (2005) nsSNPAnalyzer: Identifying disease-associated nonsynonymous single nucleotide polymorphisms. Nucleic Acids Research, 33.
  11. Mahato, R.I., Cheng, K. and Guntaka, R.V. (2005) Modulation of gene expression by antisense and antigene oligodeoxynucleotides and small interfering RNA. Expert Opinion on Drug Delivery, 2, 3.
  12. Tate, J.J., Rai, R. and Cooper, T.G. (2005) Methionine sulfoximine treatment and carbon starvation elicit Snf1-independent phosphorylation of the transcription activator Gln3 in Saccharomyces cerevisiae. Journal of Biological Chemistry, 280, 27195.
  13. Nishimoto, S.K. and Nishimoto, M. (2005) Matrix Gla protein C-terminal region binds to vitronectin. Co-localization suggests binding occurs during tissue development. Matrix Biology, 24, 353.
  14. Silva, R.A.G.D., Hilliard, G.M., Li, L., Segrest, J.P. and Davidson, W.S. (2005) A mass spectrometric determination of the conformation of dimeric apolipoprotein A-I in discoidal high density lipoproteins. Biochemistry, 44, 8600.
  15. Zhou, Y.W., Oak, S.A., Senogles, S.E. and Jarrett, H.W. (2005) Laminin-alpha1 globular domains 3 and 4 induce heterotrimeric G protein binding to alpha-syntrophin's PDZ domain and alter intracellular Ca2+ in muscle. American journal of physiology. Cell physiology, 288.
  16. Yan, W.Z., Oak, S.A., Senogles, S.E. and Jarrett, H.W. (2005) Laminin-?1 globular domains 3 and 4 induce heterotrimeric G protein binding to?-syntrophin's PDZ domain and alter intracellular Ca2+ in muscle. American Journal of Physiology - Cell Physiology, 288.
  17. Fain, J.N., Bahouth, S.W. and Madan, A.K. (2005) Involvement of multiple signaling pathways in the post-bariatric induction of IL-6 and IL-8 mRNA and release in human visceral adipose tissue. Biochemical Pharmacology, 69, 1315.
  18. Fain, J.N. and Madan, A.K. (2005) Insulin enhances vascular endothelial growth factor, interleukin-8, and plasminogen activator inhibitor 1 but not interleukin-6 release by human adipocytes. Metabolism: Clinical and Experimental, 54, 220.
  19. Li, H., Lu, L., Manly, K.F., Chesler, E.J., Bao, L., Wang, J., Zhou, M., Williams, R.W. and Cui, Y. (2005) Inferring gene transcriptional modulatory relations: A genetical genomics approach. Human Molecular Genetics, 14, 1119.
  20. Rai, R. and Cooper, T.G. (2005) In vivo specificity of Ure2 protection from heavy metal ion and oxidative cellular damage in Saccharomyces cerevisiae. Yeast, 22, 343.
  21. Nance, S., Cross, R., Yi, A.K. and Fitzpatrick, E.A. (2005) IFN-? production by innate immune cells is sufficient for development of hypersensitivity pneumonitis. European Journal of Immunology, 35, 1928.
  22. Mitra, S., Jarrett, H.W. and Jurado, L.A. (2005) High-performance catalytic chromatography: The adapter approach. Journal of Chromatography A, 1076, 71.
  23. Kamalov, G., Varma, B.R., Lu, L., Sun, Y., Weber, K.T. and Guntaka, R.V. (2005) Expression of the multifunctional Y-box protein, YB-1, in myofibroblasts of the infarcted rat heart. Biochemical and Biophysical Research Communications, 334, 239.
  24. Robman, L., Mahdi, O., McCarty, C., Dimitrov, P., Tikellis, G., McNeil, J., Byrne, G., Taylor, H. and Guymer, R. (2005) Exposure to Chlamydia pneumoniae infection and progression of age-related macular degeneration. American Journal of Epidemiology, 161, 1013.
  25. Jernigan Jr, H.M., Blum, P.S., Chakrabarti, I., Su, Y. and Zigler Jr, J.S. (2005) Effects of cataractogenesis on the CDP-choline pathway: Increased phospholipid synthesis in lenses from galactosemic rats and 13/N guinea pigs. Ophthalmic Research, 37, 7.
  26. AbdelRahman, Y.M. and Belland, R.J. (2005) The chlamydial developmental cycle. FEMS Microbiology Reviews, 29, 949.
  27. Ouellette, S.P., AbdelRahman, Y.M., Belland, R.J. and Byrne, G.I. (2005) The Chlamydia pneumoniae type III secretion-related lcrH gene clusters are developmentally expressed operons. Journal of Bacteriology, 187, 7853.
  28. Cheng, K., Ye, Z., Guntaka, R.V. and Mahato, R.I. (2005) Biodistribution and hepatic uptake of triplex-forming oligonucleotides against type?1(1) collagen gene promoter in normal and fibrotic rats. Molecular Pharmaceutics, 2, 206.
  29. Hooshdaran, M.Z., Hilliard, G.M. and Rogers, P.D. (2005) Application of proteomic analysis to the study of azole antifungal resistance in Candida albicans. Methods in molecular medicine, 118, 57.

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2004 Publications

  1. Steeves, M.A. and Marion, T.N. (2004) Tolerance to DNA in (NZB × NZW)F1 mice that inherit an anti-DNA VH as a conventional? H chain transgene but not as a VH knock-in transgene. Journal of Immunology, 172, 6568.
  2. Fain, J.N., Bahouth, S.W. and Madan, A.K. (2004) TNF? release by the nonfat cells of human adipose tissue. International Journal of Obesity, 28, 616.
  3. Hori, R.T., Xu, S., Hu, X. and Pyo, S. (2004) TFIIB-facilitated recruitment of preinitiation complexes by a TAF-independent mechanism. Nucleic Acids Research, 32, 3856.
  4. Rai, R., Daugherty, J.R., Tate, J.J., Buford, T.D. and Cooper, T.G. (2004) Synergistic operation of four cis-acting elements mediate high level DAL5 transcription in Saccharomyces cerevisiae. FEMS Yeast Research, 5, 29.
  5. Gardner, L.A., Delos Santos, N.M., Matta, S.G., Whitt, M.A. and Bahouth, S.W. (2004) Role of the cyclic AMP-dependent protein kinase in homologous resensitization of the?1-adrenergic receptor. Journal of Biological Chemistry, 279, 21135.
  6. Jayakar, H.R., Jeetendra, E. and Whitt, M.A. (2004) Rhabdovirus assembly and budding. Virus Research, 106, 117.
  7. Senogles, S.E., Heimert, T.L., Odife, E.R. and Quasney, M.W. (2004) A Region of the Third Intracellular Loop of the Short Form of the D2 Dopamine Receptor Dictates Gi Coupling Specificity. Journal of Biological Chemistry, 279, 1601.
  8. Duntsch, C.D., Zhou, Q., Jayakar, H.R., Weimar, J.D., Robertson, J.H., Pfeffer, L.M., Wang, L., Xiang, Z. and Whitt, M.A. (2004) Recombinant vesicular stomatitis virus vectors as oncolytic agents in the treatment of high-grade gliomas in an organotypic brain tissue slice-glioma coculture model. Journal of Neurosurgery, 100, 1049.
  9. Miller, M.A., Lavine, C.L., Klas, S.D., Pfeffer, L.M. and Whitt, M.A. (2004) Recombinant replication-restricted VSV as an expression vector for murine cytokines. Protein Expression and Purification, 33, 92.
  10. Li, H., Zhou, M. and Cui, Y. (2004) Ranking gene regulatory network models with microarray data and Bayesian Network. Lecture Notes in Artificial Intelligence Vol. 3327, p. 109.
  11. Hooshdaran, M.Z., Barker, K.S., Hilliard, G.M., Kusch, H., Morschha?user, J. and Rogers, P.D. (2004) Proteomic analysis of azole resistance in Candida albicans clinical isolates. Antimicrobial Agents and Chemotherapy, 48, 2733.
  12. Carlson, J.H., Hughes, S., Hogan, D., Cieplak, G., Sturdevant, D.E., McClarty, G., Caldwell, H.D. and Belland, R.J. (2004) Polymorphisms in the Chlamydia trachomatis cytotoxin locus associated with ocular and genital isolates. Infection and Immunity, 72, 7063.
  13. Zavorotinskaya, T., Qian, Z., Franks, J. and Albritton, L.M. (2004) A Point Mutation in the Binding Subunit of a Retroviral Envelope Protein Arrests Virus Entry at Hemifusion. Journal of Virology, 78, 473.
  14. Radic, M., Marion, T. and Monestier, M. (2004) Nucleosomes are exposed at the cell surface in apoptosis. Journal of Immunology, 172, 6692.
  15. Cline, A.M. and Radic, M.Z. (2004) Murine lupus autoantibodies identify distinct subsets of apoptotic bodies. Autoimmunity, 37, 85.
  16. Pinschewer, D.D., Perez, M., Jeetendra, E., Ba?chi, T., Horvath, E., Hengartner, H., Whitt, M.A., De La Torre, J.C. and Zinkernagel, R.M. (2004) Kinetics of protective antibodies are determined by the viral surface antigen. Journal of Clinical Investigation, 114, 988.
  17. Radic, M.Z., Weigert, M., Guth, A., Smith, D. and Wysocki, L.J. (2004) Intricacies of Anti-DNA Autoantibodies (multiple letters). Journal of Immunology, 172, 3367.
  18. Cui, Y., Zhou, M. and Wong, W.H. (2004) Integrated analysis of microarray data and gene function information. OMICS A Journal of Integrative Biology, 8, 106.
  19. Belland, R., Ojcius, D.M. and Byrne, G.I. (2004) In the news/focus: Chlamydia. Nature Reviews Microbiology, 2, 530.
  20. Re, F. and Strominger, J.L. (2004) IL-10 released by concomitant TLR2 stimulation blocks the induction of a subset of Th1 cytokines that are specifically induced by TLR4 or TLR3 in human dendritic cells. Journal of Immunology, 173, 7548.
  21. Xu, S. and Hori, R.T. (2004) Identification of a domain within human TAFI48, a subunit of Selectivity Factor 1, that interacts with helix 2 of TBP. Gene, 338, 177.
  22. Bruun, J.M., Lihn, A.S., Madan, A.K., Pedersen, S.B., Schiøtt, K.M., Fain, J.N. and Richelsen, B. (2004) Higher production of IL-8 in visceral vs. subcutaneous adipose tissue. Implication of nonadipose cells in adipose tissue. American Journal of Physiology - Endocrinology and Metabolism, 286.
  23. Re, F. and Strominger, J.L. (2004) Heterogeneity of TLR-induced responses in dendritic cells: From innate to adaptive immunity. Immunobiology, 209, 191.
  24. Fain, J.N., Bahouth, S.W. and Madan, A.K. (2004) Haptoglobin release by human adipose tissue in primary culture. Journal of Lipid Research, 45, 536.
  25. Cox, K.H., Kulkarni, A., Tate, J.J. and Cooper, T.G. (2004) Gln3 Phosphorylation and Intracellular Localization in Nutrient Limitation and Starvation Differ from Those Generated by Rapamycin Inhibition of Tor1/2 in Saccharomyces cerevisiae. Journal of Biological Chemistry, 279, 10270.
  26. Zhou, M. and Cui, Y. (2004) GeneInfoViz: Constructing and visualizing gene relation networks. In Silico Biology, 4, 323.
  27. Irie, T., Licata, J.M., Jayakar, H.R., Whitt, M.A., Bell, P. and Harty, R.N. (2004) Functional analysis of late-budding domain activity associated with the PSAP motif within the vesicular stomatitis virus M protein. Journal of Virology, 78, 7823.
  28. Robinson, F.D., Moxley, R.A. and Jarrett, H.W. (2004) Effect of the detergent Tween-20 on the DNA affinity chromatography of Gal4, C/EBP? and lac repressor with observations on column regeneration. Journal of Chromatography A, 1024, 71.
  29. Brady, G.F., Congdon, K.L., Clark, A.G., Sackey, F.N.A., Rudolph, E.H., Radic, M.Z. and Foster, M.H. (2004)? Editing Rescues Autoreactive B Cells Destined for Deletion in Mice Transgenic for a Dual Specific Anti-Laminin Ig. Journal of Immunology, 172, 5313.
  30. Kumaraswami, M., Howe, M.M. and Park, H.W. (2004) Crystal Structure of the Mor Protein of Bacteriophage Mu, a Member of the Mor/C Family of Transcription Activators. Journal of Biological Chemistry, 279, 16581.
  31. Braid, M.D., Silhavy, J.L., Kitts, C.L., Cano, R.J. and Howe, M.M. (2004) Complete genomic sequence of bacteriophage B3, a Mu-like phage of Pseudomonas aeruginosa. Journal of Bacteriology, 186, 6560.
  32. Qian, Z., Wang, H., Empig, C., Anderson, W.F. and Albritton, L.M. (2004) Complementation of a binding-defective retrovirus by a host cell receptor mutant. Journal of Virology, 78, 5766.
  33. Fain, J.N., Madan, A.K., Hiler, M.L., Cheema, P. and Bahouth, S.W. (2004) Comparison of the release of adipokines by adipose tissue, adipose tissue matrix, and adipocytes from visceral and subcutaneous abdominal adipose tissues of obese humans. Endocrinology, 145, 2273.
  34. Belland, R.J., Ouellette, S.P., Gieffers, J. and Byrne, G.I. (2004) Chlamydia pneumoniae and atherosclerosis. Cellular Microbiology, 6, 117.
  35. Byrne, G.I. and Ojcius, D.M. (2004) Chlamydia and apoptosis: Life and death decisions of an intracellular pathogen. Nature Reviews Microbiology, 2, 802.
  36. Siboo, I.R., Sieder, F., Kumar, K., Howe, M.M. and DuBow, M.S. (2004) Characterization of Plys-proximal morphogenetic genes of transposable bacteriophage Mu. Archives of Virology, 149, 241.
  37. Gabrielli, M.G., Cox, J.V., Materazzi, G. and Menghi, G. (2004) Cell type-specific and developmentally regulated expression of the AE1 anion exchanger in the chicken chorioallantoic membrane. Histochemistry and Cell Biology, 121, 189.
  38. Dynes, J.L., Xu, S., Bothner, S., Lahti, J.M. and Hori, R.T. (2004) The Carboxyl-Terminus Directs TAFI48 to the Nucleus and Nucleolus and Associates with Multiple Nuclear Import Receptors. Journal of Biochemistry, 135, 429.
  39. Ma, J. and Howe, M.M. (2004) Binding of the C-terminal domain of the? subunit of RNA polymerase to the phage Mu middle promoter. Journal of Bacteriology, 186, 7858.
  40. Qi, Z., Cui, Y., Fang, W., Ling, L. and Chen, R. (2004) Autosomal similarity revealed by eukaryotic genomic comparison. Journal of Biological Physics, 30, 305.
  41. Qian, Z. and Albritton, L.M. (2004) An Aromatic Side Chain Is Required at Residue 8 of SU for Fusion of Ecotropic Murine Leukemia Virus. Journal of Virology, 78, 508.
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